Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIEL-NQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLG-TSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
4ERX Chain:B ((6-192))
--LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ-
General information:
TITO was launched using:
RESULT:
Template:
4ERX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102693 for 1519 contacts (-67.6/contact) +
2D Compatibility (PS) -19764 + (NN) -5174 + (LL) 576
1D Compatibility (HY) -11600 + (ID) 3250
Total energy: -141905.0 ( -93.42 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_4ERX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ERX-query.scw
PDB file :
Tito_Scwrl_4ERX.pdb
: