Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDM---------ISYK-ENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ--
2KKC Chain:A ((1-100))
HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKD-DIFRIYIKEK
General information:
TITO was launched using:
RESULT:
Template:
2KKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20031 for 398 contacts (-50.3/contact) +
2D Compatibility (PS) -7949 + (NN) 2037 + (LL) 92
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -27501.0 ( -69.10 by residue)
QMean score : 0.221
(partial model without unconserved sides chains):
PDB file :
Tito_2KKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KKC-query.scw
PDB file :
Tito_Scwrl_2KKC.pdb
: