Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------------------------------------------MEKAERRVNGPMAGQALEKLQSFFNRGTKLVTHHLHSLFFYKGFIYVVIGFLLGRAFILSEVLPFALPFFGAMLLIRRDKAFYAVLAVLAGALTIS-----PKHSLLILAALLAFFVFSKVAA--FITDDRVKAL--PIVVFFSMAAARAGFVYAQNGVFTTYDYVMAI--VEAGLSFILT--LIFLQSLP------------IFTVKKVKQSLKIEEIICFMILIA---------------SVLTGLAGLSYQGMQAE-----------------HILARYVVLSFSFIGGASIGCTVGVVTGLILGLANIG-NLYQMSLLAFSGLLGGLLKEGKKAGAAIGLIVG----SLLISLY-------GEGSAGLMTTLYESLIAVCLF---LLTPQSITRKVARYIPGTVEHLQEQQQYARK---------IRDVTAQKVDQFSNVFHALSESFATFYQASDEQTDDSEVD--LFLSKITEHSCQTCYKKNRCWVQN-----FDKTYDLMKQVMLETEEKEYASN------------RRLKKEFQQYCSKSKQVE-ELIEDELAHHHA----HLTLKKKVQDSRRLVAEQLLGVSEVMADFSREI--------KREREQHFLQEEQ--IIEALQHF-GIEIQHVEIYSLEQGNIDIEMTIPFSGHGESEKIIAPMLSDILEEQILVKAEQHSPHPNGYSHVAFGSTKSYRVSTGAAHAAKGGGLVSGDSYSMMELGARKYAAAISDGMGNGARAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRT--TDEIYSTLDLSIIDLQDA-SCKFLKVGSTPSFIKRGDQVMKVQASNLPIGIINEFDVEVVSEQLKAGDLLIMMSDGIFEGP---KHVENHDLWMKRKMKGLKTN----DPQEIADLLMEEV-------------------IRTRSGQIEDDM--------TVVVVRIDHNTPKWASIPVPAIFQNKQEIS------------------------------------------------------------------- |
| 4M8O Chain:A ((31-1186)) | ALSAQQLLNASKIDDIDSMMGFERYVPPQYNGRFDAKDIDQIPGRVGWLTNMHATLVSQEVTTNQGISGVDFYFLDEEGGSFKSTVVYDPYFFIACNDESRVN-DVEELVKKYLESCLKSLQIIRKEDLTMDNHLLGLQKTLIKLSFVNSNQLFEARKLLRPILQDNANNNVQRNIYNVKVDAKHLIEDIREYDVPYHVRVSIDKDIRVGKWYKVTQQGFIEDTRKIAFADPVVMAFAIATTKPPLKFPDSAV----DQIMMISYMIDGEGFLITNREIISEDIEDFEYTPKPEYPGFFTIFNENDEVALLQRFFEHIRDVRPTVISTFNGDFFDWPFIHNRSKIHGLDMFDEIGFAPDAEGEYKSSYCSHMDCFRWVKRDSYLPQGSQG--LKAVTQSKLGYNPIELDPELMTPYAFEK-PQHLSEYSVSDAVATYYLYMKYVHPFIFSLCTIIPLNPDETLRKGTGTLCEMLLMVQAYQHNILLPNKHTDPIERFYDG---HLLESETYVGGHVESLEAGVFRSDLKNEFKIDPSAIDELLQELPEALKFSVEVENKSSVDKVTNFEEIKNQITQKLLELKENNIRNELPLIYHVDVASMYPNIMTTNRLQPDSIKAERDCASCTCARKLKWAWRGEFFPSKMDEYNMIKRALQNETFPNKNKFSKKKVLTFDELSYADQVIHIKKRLTEYSRKVYHRVKVSEIVEREAIVCQRENPFYVDTVKSFRDRRYEFKGLAKTWKGNLSKIDPSDKHARDEAKKMIVLYDSLQLAHKVILNSFYGYVMRKG-SRWYSMEMAGITCLTGATIIQMARALVERVGRPL-ELDTDGIWCILPKSFPETYFFTLENGKKLYLS--YPCSMLNYRVHQKFTNHQYQELKDPLNYIYETHSENTIFFEVDGPYKAMILPSSKEEGKGIKKRYAVFNEDGSLAELKGFELKRRGELQLIKNFQSDIFKVFLEGDTLEGCYSAVASVCNRWLDVLDSHGLMLEDEDLVSLICENRSMSKTLKEYEGQKSTSITTARRLGDFLGEDMVKDKGLQCKYIISSKPFNAPVTERAIPVAIFSADIPIKRSFLRRWTLDPSLEDLDIRTIIDWGYYRERLGSAIQKIITIPAALQGVSNPVPRVEHPDWLKRKIAT |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4M8O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -221620 for 5636 contacts (-39.3/contact) +
2D Compatibility (PS) -84398 + (NN) -5219 + (LL) 1256
1D Compatibility (HY) -29600 + (ID) 7550
Total energy: -347131.0 ( -61.59 by residue)
QMean score : 0.171
|
|
|