Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGS-RYHRRPGSMGPV-DPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK
5DM6 Chain:B ((1-204))
-MKGILGTKIGMTQIWK-NDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILREFRG----FAPDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLRSAAKA-
General information:
TITO was launched using:
RESULT:
Template:
5DM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14399 for 1342 contacts (-10.7/contact) +
2D Compatibility (PS) -21389 + (NN) -2737 + (LL) 804
1D Compatibility (HY) -13200 + (ID) 5400
Total energy: -56321.0 ( -41.97 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_5DM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DM6-query.scw
PDB file :
Tito_Scwrl_5DM6.pdb
: