Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDGSSLFQNQIELLESAFQQQRLPELVLIGIEPENRLDEYTPWPAASL-----S-DR--FTDFGGMGYHYLSDITNQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENAA-------E-------TIHIS-------SL-KPGTARVFMSIGSEEGREKQSIQRHMLK-KTKQVHQSLKEKGFTEDQLCLSIEKGAVHHHKYFCKQFINALEWLYGKNRSTL |
| 3LS2 Chain:A ((25-279)) | --------THCTMRFAVFLPPGASE-SNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQGAGFYVNATQAP-YNTHFNMYDYVVNELPALIEQHFPV---TSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLD-------EQLKPQNLVAVAKQKDYP---LTLEMQTGYDHSYFFISSFIDQHLVFHHQYLS--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LS2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78602 for 1824 contacts (-43.1/contact) +
2D Compatibility (PS) -23901 + (NN) -10730 + (LL) 1796
1D Compatibility (HY) -6000 + (ID) 1950
Total energy: -119387.0 ( -65.45 by residue)
QMean score : 0.381
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