Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL
4CXF Chain:A ((6-187))
---ADRILAAQAASGNQRAFGQLVARHGVALAQAARSFGIPETDVDDVVQDTFVAAWHALDDFDPDRPFRAWLFRIGLNKMRDLYRFRR--------------------------------AARLELARVASTLGKLDTGSREVIVLTAIVGMSQPEAAAVLGLSVKAVEGRIGRARAKLSALLDA-
General information:
TITO was launched using:
RESULT:
Template:
4CXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84605 for 1135 contacts (-74.5/contact) +
2D Compatibility (PS) -15893 + (NN) -3715 + (LL) 2664
1D Compatibility (HY) -3600 + (ID) 2100
Total energy: -107249.0 ( -94.49 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4CXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CXF-query.scw
PDB file :
Tito_Scwrl_4CXF.pdb
: