Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLT-QLETMKDKIQTLDYLFQNCKPEFLGGTVDEWLNENSSDTIEKSVDMIRHHPLVPSY------VKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
5CXK Chain:A ((31-196))
--KGQNPDFLWIGCADSRVPAE--RLTGLYSGELFVHRNVANQVIHTDLNCLSVVQYAVDVLQVKHIIVCGHYGCGGVTAAIDNPQLGLINNWLLHIRDYYLKHREYLDKMPAEDRSDKLAEINVAEQVYNLANSTVLQNAWERGQAVEVHGFVYGIEDGRLEYLGVRCA------------
General information:
TITO was launched using:
RESULT:
Template:
5CXK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55619 for 1245 contacts (-44.7/contact) +
2D Compatibility (PS) -16550 + (NN) -541 + (LL) 872
1D Compatibility (HY) -8400 + (ID) 950
Total energy: -81188.0 ( -65.21 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_5CXK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CXK-query.scw
PDB file :
Tito_Scwrl_5CXK.pdb
: