Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHTVTQTSLYGKDLLTLKDLSEEDINALLAEAGELKQN--------KIQPIFHGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYVDAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEIKGK------LKGVKVAYIGDGNNVAHSLMIGCAKMGCDISIASPKGYEVLDEAAEAAKTY--ALQSGSSVTLTDDPIEAVKDADVIYSDVFTSMGQEAEEQERLAVFAPYQVNAALVSH--AKPDYTFLHCLPAHREEEVTAEIIDGPNSAVFQQAENRLHVQKALLKA-ILYKGESSKNC
3SDS Chain:B ((24-351))-----------RHLLSIADLTPTEFATLVRNASSYKKTIKSDSMPERLTGALSGKTVAMMFSKRSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARV--HSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFA-HPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTW--------KIKRLEAFKDFKVTSELAKRGGAKENWKFMHCLPRH-PEEVSDEVFYSERSLVFPEAENRLWAAISALEAFVVNKGK-----


General information:
TITO was launched using:
RESULT:

Template: 3SDS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1556 -192389 -123.64 -661.13
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -123.64
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.609

(partial model without unconserved sides chains):
PDB file : Tito_3SDS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3SDS-query.scw
PDB file : Tito_Scwrl_3SDS.pdb: