Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGFKSEVLVLGGIPGQGDVVLLQPDQPVPNGTKIG
1MKH Chain:A ((2-107))YVKFDDFAKLDLRVGKIIEVKDHPNADK-LYVVKVDLGDE--VRTLVAGLKKYYKPEELLNRYVVVVANLEPKKL-GIGSQGMLLAADDGE-RVALLMPDKEVKLGAKVR


General information:
TITO was launched using:
RESULT:

Template: 1MKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 453 -53681 -118.50 -511.24
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -118.50
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.514

(partial model without unconserved sides chains):
PDB file : Tito_1MKH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1MKH-query.scw
PDB file : Tito_Scwrl_1MKH.pdb: