Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNMDFNLFMNDIVRQARQEITAAGYTELKTAEEVDEALTKKGTTLVMVNSVCGCAGGIARPAAYHSVHYDKRPDQLVTVFAGQDKEATARARDYFEGYPPSSPSFAIL-KDGKIMKMVERHEIEGHEP------MAVVAKLQEAFEEYCEEV-
1SEN Chain:A ((22-155))LGKGFG-----------------DHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD--EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF


General information:
TITO was launched using:
RESULT:

Template: 1SEN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 606 -29590 -48.83 -234.84
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -48.83
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.351

(partial model without unconserved sides chains):
PDB file : Tito_1SEN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1SEN-query.scw
PDB file : Tito_Scwrl_1SEN.pdb: