Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNEFMKKFSLTKPIIQAPMAGGITKPRLASAVSNQGALGSLASGYL-TPDLLEQQIKEIFELTDAPFQINVFVPLGLEMPPKDQIKKWKENIPLANQVNQFTSVQEEWDDFYQKIDLILKYKVKACSFTFDLPPEDAVKELKTAGCCLIGTASTVEEALLMEERGMDIVVLQGSEAGGHRGAFLPSKGESAVGLMALIPQAADALSVPVIAAGGMIDHRGVKAALTLGAQGVQIGSAFLICHESNAHPVHKQKILEANEADTKLTTLFSGKEARGIVNKWMEENEQFETQ-TLPYPYQNTLT--KAMRQKASLQNNHDQMSLWAGQGIRSLTEEISVKQLLNQLCQEDIKI
2GJL Chain:A ((5-315))RTRFTETFGVEHPIMQGGMQ-WVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKP-----------------------------VPYAEYRAAIIEAGIRVVETAGNDP-GEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGED-------DIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERSTDLIMRSLRNTARVARNAISQEVLAIEARGGAGYADIAALVSGQRGRQVYQ-QGDTDLGIWSAGMVQGLIDDEPACAELLRDIVEQARQ-


General information:
TITO was launched using:
RESULT:

Template: 2GJL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1860 -48044 -25.83 -156.50
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -25.83
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.426

(partial model without unconserved sides chains):
PDB file : Tito_2GJL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GJL-query.scw
PDB file : Tito_Scwrl_2GJL.pdb: