Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSQSFNRHRRLRTSKAMREMVKETRLHPSDFIYPIFVVEGLEGKKAVPSMPDVHHVSLDLLKDEVAELVKLGIQSVIVFGIPEEKDDCGT----QAYHDHGIVQKAITEIKEHFPEMVVVADTCLCEYTDHGHCGLV--KDGVILNDESLELLAQTAVSQAKAGADIIAPSNMMDGFVTVIREALDKEGFVNIPIMSYAVKYSSEFYGPFRDAANSTPQFG-DRKTYQMDPANRMEALREAQSDVEEGADFLIVKPSLSYMDIMRDVKNEFTLPLVAYNVSGEYSMVKAAAQNGWIKEKEIVLEILTSMKRAGADLIITYHAKDAAKWLAE
3OBK Chain:C ((22-343))------RPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDE-ETSVPIPSMPGQSRLSMEDLLKEVGEARSYGIKAFMLF--PKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAEADASEGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYAKEAAKWMVE


General information:
TITO was launched using:
RESULT:

Template: 3OBK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1722 -34188 -19.85 -108.53
target 2D structure prediction score : 0.74
Monomeric hydrophicity matching model chain C : 0.84

3D Compatibility (PKB) : -19.85
2D Compatibility (Sec. Struct. Predict.) : 0.74
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.647

(partial model without unconserved sides chains):
PDB file : Tito_3OBK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3OBK-query.scw
PDB file : Tito_Scwrl_3OBK.pdb: