Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
1C5F Chain:M ((21-170))
-----------------------GRIVMELYNDIAPRTCNNFLMLCTGMA--GTGKISGKPL--HYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG--QEVVTKIEYLKTNSKNRPLADVVI------
General information:
TITO was launched using:
RESULT:
Template:
1C5F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54285 for 1098 contacts (-49.4/contact) +
2D Compatibility (PS) -15883 + (NN) -14159 + (LL) 1700
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -98177.0 ( -89.41 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1C5F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C5F-query.scw
PDB file :
Tito_Scwrl_1C5F.pdb
: