Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSKVRKKNDFTVSAVSRT-----PMKVKVGPSSVWF--------VSLFIGLMLIGLIWLMVFQLAAIGSQAPTALNWMAQLG-PWNYAIAFAFMITGLLLTMRWH---------------
2RHK Chain:A ((2-120))
-PAS--RYITDMTIEELSRDWFMLMPKQKVEGPLCIRIDQAIMDKNIMLKANFSVIFDRLETLILLRAFTEEGAIVGEISPLPSFPGHTIEDVKNAIGVLIGGLEWNDNTVRVSKTLQRFAW
General information:
TITO was launched using:
RESULT:
Template:
2RHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78089 for 583 contacts (-133.9/contact) +
2D Compatibility (PS) -9699 + (NN) -2226 + (LL) 464
1D Compatibility (HY) -800 + (ID) 900
Total energy: -91250.0 ( -156.52 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_2RHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RHK-query.scw
PDB file :
Tito_Scwrl_2RHK.pdb
: