Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAGASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVFHTNVGVLQGLPD--------PFTATRYHSLTILPKSLPAVLRVTARTSSGVIMAVQHTGLPIHGVQFHPESILTEGGHRILANWL-TCCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
3TQI Chain:A ((8-260))
HRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEET-I--RDFNPHGIILSGGPE----------APAFIFEIGCPVLGICYGMQTMAYQLGGKVN-----EFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS--ELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIR-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3TQI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154201 for 1600 contacts (-96.4/contact) +
2D Compatibility (PS) -19912 + (NN) -3201 + (LL) 1716
1D Compatibility (HY) -7600 + (ID) 2300
Total energy: -185498.0 ( -115.94 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_3TQI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQI-query.scw
PDB file :
Tito_Scwrl_3TQI.pdb
: