Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQ-AGSS-VAVIQERQALLAR---QHDAVAEADRELA----------DVLASAHAAM-RESVRRLDAIAAELDRAV-------PDQDQLAVDTPMGAREFQTFLVAKQREIVAVVAAAHELDRAKSAVLKRLRAQYTEPAR----------------------
1RFZ Chain:A ((1-164))
-SNAMSEFIMNNLEQTARRWLEERGVTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISKREVQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALSIVNVYGSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA
General information:
TITO was launched using:
RESULT:
Template:
1RFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11932 for 704 contacts (16.9/contact) +
2D Compatibility (PS) -13240 + (NN) -11897 + (LL) 208
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -15897.0 ( -22.58 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1RFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RFZ-query.scw
PDB file :
Tito_Scwrl_1RFZ.pdb
: