Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFAAFARGDLAELTQCFAPDVEQFVPGKHALAGVFRGVDNVVACLGDTAAAADGTMTVTLEDVLSNTDGQVIAVYRLRASRAG--KVLDQREAILVTVAGGRITRLSEFYADPAATESFWA
4H3U Chain:A ((25-148))
---MTTPEIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIG---ATMTGREQISGWKARTDAMIE-NVHVTITKAYRAG-DHVTIEAVYGGHIKGAPTPFAVPMATLLRTRGEEITSDQDYYSLSSVLAQSG-
General information:
TITO was launched using:
RESULT:
Template:
4H3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83043 for 898 contacts (-92.5/contact) +
2D Compatibility (PS) -13581 + (NN) -6161 + (LL) 544
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -104441.0 ( -116.30 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_4H3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3U-query.scw
PDB file :
Tito_Scwrl_4H3U.pdb
: