Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPY-LIDNRYPHSPRLIE---YTWQL---RHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR
2LCQ Chain:A ((10-114))
KKTLVLDSSVFIQGID---------------IEGYTTPSVVEEIKDRESKIF-------------LESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEVLALAYELKGEIFSDDYNVQNIASLL-------
General information:
TITO was launched using:
RESULT:
Template:
2LCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52117 for 715 contacts (-72.9/contact) +
2D Compatibility (PS) -10497 + (NN) 185 + (LL) 3108
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -62021.0 ( -86.74 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2LCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LCQ-query.scw
PDB file :
Tito_Scwrl_2LCQ.pdb
: