Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDA---ERFGARLVA------------------SPQHADALLVTGVVTHNMA---------GPLRKTLEATPRPRVVIACGDCALNRGVFADA--YGVVGAVGEVVP----VDVEIAGCPPTPAAIMAALRSVTGK
4U9H Chain:S ((3-164))
--------------------------------RRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYLK-
General information:
TITO was launched using:
RESULT:
Template:
4U9H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100122 for 1011 contacts (-99.0/contact) +
2D Compatibility (PS) -13209 + (NN) -3297 + (LL) 2468
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -120810.0 ( -119.50 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_4U9H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U9H-query.scw
PDB file :
Tito_Scwrl_4U9H.pdb
: