Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHEL-GGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4WKB Chain:A ((1-231))
--MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHDADVTAFG----YEIGQMAGQPA----AFKADEKLMTVAEQALAQ-------------LPNTHAVRGLICTGDAFVCTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELLK--
General information:
TITO was launched using:
RESULT:
Template:
4WKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -219145 for 2062 contacts (-106.3/contact) +
2D Compatibility (PS) -24266 + (NN) -6281 + (LL) 1556
1D Compatibility (HY) -19600 + (ID) 3550
Total energy: -271286.0 ( -131.56 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_4WKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WKB-query.scw
PDB file :
Tito_Scwrl_4WKB.pdb
: