Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRSDTLATKLPWSDWLSRQRWYAGRNRELATVKPGVVVALRHNLDLVLVDVTYTDGATERYQVLVGWDFEPASEYGTKAAIGVADDRTGFDALYDVAGPQFLLSLIVSSAVCGTSTGEVTFTREPDVELPFAAQPRVCDAEQSNTSVIFDRRAILKVFRRVS--SGINPDIELNRVLTRA-GNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEANAAEGWAMATASVRDLFAEGDLYAHEVGGDFAGESYRLGEAVASVHATLADSLGTA--QA---TFPVDRMLARLSSTVAVVPELRE-YAPTIEQQFQKLAA---E-AITVQRVHGDLHLGQVLRTPE-----SWLLIDFEGEPGQPLDERRAPDSPLRDVAGVLRSFEYAAYGPLVDQATDKQLAARAREWVERNRAAFCDGYAVASGIDPRDSALLLGAYELDKAVYETGYETR-HRPGWLPIPLRSIARLTAS |
3TDW Chain:A ((21-293)) | ------------------------------------------------------------------------------------------------------------------------------------IQSVESLGEGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKV-NIPQYVYIGKR----------SDGNPFVGYRKVQGQILG-EDGMAVL-------------PDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVF--PLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGD---------AAISDPDYDYVYLLEDCG-------------------------ELFTRQVMAYRGEVDL--DTHIRKVSLFVTFDQVSYLLEGLRARDQDWISEGLELL------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68811 for 1864 contacts (-36.9/contact) +
2D Compatibility (PS) -25817 + (NN) 3325 + (LL) 12348
1D Compatibility (HY) -8800 + (ID) 1750
Total energy: -89505.0 ( -48.02 by residue)
QMean score : 0.228
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