Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGISRRTFGLAAGFGAIGAGGLGGGCSTRSGPTPTPEPASRGVGVVLSHE----------------QFRTDRLVAHAQAAEQAGFRYVWASDHLQPWQD---NEGHSMFPWLTLALVGNSTSSILFGTGVTCPIYRYHPATVAQAFASLAILNPGRVFLGLGTGERLNEQAATDTFGN----YRERHDRLIEAIVLIRQLWSGE---------------------RISFTGHYFRTDE-LKLYDTPAMPPPIFVAASGPQSATLAGRYGDGWIAQARDI-NDAKLLAAFAAGAQAAGRDPTTLGKRAELFAVVGDDKAAARAADLWR-----------FTAGAV---D-------QPN-------PV-------EIQRAAE--SNPIEK-----------VLANWAVGTDPGVHIGAVQAVLDA-GAVPFLHFPQDDPITAIDFYRTNVLPELR |
| 3SDO Chain:A ((4-417)) | -----------------------------------SMTRKHIHFGVLIQGAGANMNAWKHPSVPPDASVNFDFYVDRARRAENAGIAFAFIADSAYVTPKSAPHFLNRFEPISLLSALAVLTSKIGLV-GTMSSSY-SEPYNVARQFASLDLISGGRAGWNVVTSSIEGTGK---NYGRPHPDHAQRYAIAAEHLDVVQGLWDSWDDDALVRDRATGRFFDPDKLHRLDHRGRFFSVEGPLNIRRSPQGQPVIFQAGSSDDGIDLAGRSADAVFSNGSTFDEARVFYRRVKAAAAAAGRNPDHVKVFPGIGPIVGATQQEADDKYRQVRDLLSPREALAYLSHFFQQHDFSVYPLDGPFPDIGTLGSDGFQSTTDNIKRLARERKLTLREVAYEVSTRRSNIGTSEAFIGTPEAVASEMIRWVDEGAADGFMLGL-PVTGFGLDDFVDHVLPVLS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151187 for 2565 contacts (-58.9/contact) +
2D Compatibility (PS) -34960 + (NN) -19450 + (LL) 508
1D Compatibility (HY) -11600 + (ID) 3600
Total energy: -220289.0 ( -85.88 by residue)
QMean score : 0.475
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