Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNRIVLEPSADHPITIEPTNRRVQVR-----VNGEVVADTAAALCLQEASYPAVQYIPLADVVQDRLIRTETSTYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEISIFPG
2XXS Chain:A ((1-107))
NSNL------APFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETLEFGNDNFPE-NIIPVTDSKSDGIIYLTIS-------KDNICQFSDEKGEQIDI---NSQFNSFEYDGISFHLKNMREDK-------
General information:
TITO was launched using:
RESULT:
Template:
2XXS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17506 for 669 contacts (-26.2/contact) +
2D Compatibility (PS) -10976 + (NN) -4678 + (LL) 1644
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -36116.0 ( -53.99 by residue)
QMean score : 0.104
(partial model without unconserved sides chains):
PDB file :
Tito_2XXS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XXS-query.scw
PDB file :
Tito_Scwrl_2XXS.pdb
: