Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPFDDPQAELAWMFLQSLCEGGDLDEGFALLSNDFTYWSIVTRTELDKKTFRRAVERRKQVFEVNIELIRCVNEGETVVVEGHCDGVSADRTRYDSPFVCIFETRDGMIISLREYSDTQSLAEVYPVACATPGRC
2BNG Chain:A ((13-139))
---ETTEAIRAVEAFLNALQN-EDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQGRVGFEVKIHRIGADGAAVLTERTDALII-GPLRVQFWVCGVFEVDDGRITLWRDYFDVYDMFKGLLRGLVA----
General information:
TITO was launched using:
RESULT:
Template:
2BNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44768 for 906 contacts (-49.4/contact) +
2D Compatibility (PS) -13739 + (NN) -4389 + (LL) -64
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -66910.0 ( -73.85 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2BNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNG-query.scw
PDB file :
Tito_Scwrl_2BNG.pdb
: