Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGG-ILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITID----FAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTPPLD-DLVGDDLVPYRTLVTQAPVGVMV-GHLQVPGLTGSEPASLSKAAV-NLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVP-AVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 1Y65 Chain:A ((10-288)) | ---------------------------------------------------------------------VAGYELSAEDREILQHPTVGGVILFGRNYHDNQQLLALNKAIRQAAKRPILIGVDQEGGRVQRFREGFSRIPPAQYYARAENGV----ELAEQGGWLMAAELIAHDVDLSFAPVLDMGFAC--KAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMATTGKHFPGHGAVIADSH---LETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYD-AQPASGSSYWLKQVLREELG-----FKGIVFSDDLS-MEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNL--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y65.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89085 for 2296 contacts (-38.8/contact) +
2D Compatibility (PS) -28925 + (NN) -11974 + (LL) 5028
1D Compatibility (HY) -12000 + (ID) 4600
Total energy: -141556.0 ( -61.65 by residue)
QMean score : 0.350
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