Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDLVRVERKGRVTTVILNRPASRNAVNGPTAAALCAAFEQFDRDDAASVAVLWGAGGTFCAGADLKAFGTPEANSVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRGVPADEALAMGLANRVVPKGQARQAAEELAAQLAAL-PQQCLRSDRLSALH-QWGLPESAALDLEFASIARVAGEALEGARRFAAGAGRHGAPAPRAEQGDTL |
3TRR Chain:F ((6-246)) | -ADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERG----LGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFA------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TRR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124690 for 2005 contacts (-62.2/contact) +
2D Compatibility (PS) -26185 + (NN) -12083 + (LL) -44
1D Compatibility (HY) -8800 + (ID) 5000
Total energy: -176802.0 ( -88.18 by residue)
QMean score : 0.494
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