Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVRVGDPELVLDPYDYDFHEDPYPYYRRLRDEAPLYRNEERNFWAVSRHHDVLQGFRDSTALSNAYGVSLDPSSRTSEAYRVMSMLAMDDPAHLRMRTLVSKGFTPRRIRELEPQVLELARIHLDSALQTESFDFVAEFAGKLPMDVISELIGVPDTDRARIR-------ALADAVLHREDGVADVPPPAMAASIELMRYYADLIAEFRRRPANNLTSALLAAELDGDRLSDQEIMAFLFLMVIAGNETTTKLLANAVYWAAHHPGQLARVFADHSRIPMWVEETLRYDTSSQILARTVAHDLTLYDTTIPEGEVLLLLPGSANRDDRVFDDPDDYRIGREIGCKLVSFGSGAHFCLGAHLARMEARVALGALLRRIRNYEVDDDNVVRVHSSNVRGFAHLPISVQAR |
| 3R9B Chain:C ((18-414)) | ---------LLLQLLDPATRADPYPIYDRIRRGGPLALPEA-NLAVFSSFSDCDDVLRHPSSCSDRTKSTIFQRQLA-----PASFLFLDPPDHTRLRGLVSKAFAPRVIKRLEPEITALVDQLLD-AVDGPEFNLIDNLAYPLPVAVICRLLGVPIEDEPKFSRASALLAAALDPFLALTGETSDLFDEQMKAGMWLRDYLRALIDERRRTPGEDLMSGLVAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAADGSRASAVIEETMRYDPPVQLVSRYAGDDLTIGTHTVPKGDTMLLLLAAAHRDPTIVGAPDRFDPDRA-QIRHLGFGKGAHFCLGAPLARLEATVALPALAARFPEARLSGEPEYK-RNLTLRGMSTLSIAV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R9B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -231099 for 3185 contacts (-72.6/contact) +
2D Compatibility (PS) -41314 + (NN) -17760 + (LL) 1704
1D Compatibility (HY) -27600 + (ID) 7200
Total energy: -323269.0 ( -101.50 by residue)
QMean score : 0.431
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