Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADQLTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--KRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEPQT-----D--PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVEN-SLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL |
| 2DR1 Chain:A ((15-378)) | ------------EMVKPKYKLFTAGPVACFPEVLEIMKV---QM--FSHRSKEYRKVHMDTVERLREFLEVEKG-EVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGR--KAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPE----RGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEP-GHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DR1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156724 for 3113 contacts (-50.3/contact) +
2D Compatibility (PS) -38279 + (NN) -22780 + (LL) 1316
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -236817.0 ( -76.07 by residue)
QMean score : 0.502
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