Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGVSEAERRGHRKLVRFQARRAIGPIRPTSAAWDRD-FDPAGKRIAVVGTDAAAAHYISRLSESAASVTVFTQAPRRVVTGVPLW--------------------------------------------TTRA----------------------------KRWL----R---------RRTGA--------------------EHPAVAWAT---AAIDALTSSGIRTSDGVEHPVDAIIYGTGFAIADQ-VGDQTLVGAGGVTIRQAWDDGMEPYLGVAVHGFPNYFFITGPDT-----------AAQARCVVECMKLMERTASRRIEVRRSSQQVFNERAQLKPAQPHRQTGGLEAFDLSSAATEDDQTYDGAATLTLAGARFRVRVRLTGHLDPIDGNYHWQGTVFDSLPETSLTHARAATLTIGGRSAPARITEQTPWGTHSVAGVGPPPYARSGPASATT |
| 1W4X Chain:A ((145-496)) | -YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYP----------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W4X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93291 for 1538 contacts (-60.7/contact) +
2D Compatibility (PS) -24870 + (NN) -9901 + (LL) 4872
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -136990.0 ( -89.07 by residue)
QMean score : 0.338
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