Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYG---PLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILP---AVRRAVAATRNGRIGVIGTRATITSHAYQDAFAAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
4B1F Chain:A ((3-192))
-------IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEAL---DFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQV-EDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIE---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4B1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156192 for 1490 contacts (-104.8/contact) +
2D Compatibility (PS) -20168 + (NN) -7123 + (LL) 5796
1D Compatibility (HY) -18800 + (ID) 3350
Total energy: -199837.0 ( -134.12 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_4B1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B1F-query.scw
PDB file :
Tito_Scwrl_4B1F.pdb
: