Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------MIRELVTTAAITGAAIGGAPVAGADPQRYDG-DVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFP---PAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGW-----FTGAGFFPPEP-----------------------
2VT3 Chain:A ((11-209))
ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGYNVDYLLSFFRKTLDQDDVILIGVGNLGTAFLHYNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYS
General information:
TITO was launched using:
RESULT:
Template:
2VT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28606 for 836 contacts (-34.2/contact) +
2D Compatibility (PS) -14403 + (NN) -6865 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -53274.0 ( -63.72 by residue)
QMean score : -0.000
(partial model without unconserved sides chains):
PDB file :
Tito_2VT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT3-query.scw
PDB file :
Tito_Scwrl_2VT3.pdb
: