Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAA-QVGTEHL-AADLLVALDRNHARLLRQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
4ETM Chain:A ((19-163))
----ISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDLADVPDPYY--TGNFEEVCQLIKTGCEQL--------------
General information:
TITO was launched using:
RESULT:
Template:
4ETM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93437 for 1180 contacts (-79.2/contact) +
2D Compatibility (PS) -16146 + (NN) -13793 + (LL) 160
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -137416.0 ( -116.45 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_4ETM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ETM-query.scw
PDB file :
Tito_Scwrl_4ETM.pdb
: