Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------MGQIVAGEIGGQRTTPVGGGLPLACCLDGRPPIVPHRRRRR------IA---ALRSVLRMRDTPRPARSRCDQVTS-----------------HAVLI----------------------------------GWRAVPRRHGGELPRRG--------ALALGCIALLLMG----IVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSASTV--SGSLSAALSAQLGDA---LNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVAAF--------------------------- |
| 2RIO Chain:A ((8-434)) | NFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPKSKKLEFLLKVSDRLEIENRDPPS--ALLMKFDAGSDFVIPSGDWTVKFDKTFMDRKYHSSKLMDLLRALRNKYHHFMDLP--EDIAELMGPVPDGFYDYFTKRFPNLLIGVYMIVKENLSDDQILREFLYS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2RIO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -79804 for 1673 contacts (-47.7/contact) +
2D Compatibility (PS) -27491 + (NN) -6248 + (LL) 168
1D Compatibility (HY) -10400 + (ID) 1550
Total energy: -125325.0 ( -74.91 by residue)
QMean score : 0.299
|
|
|