Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
2V4Y Chain:C ((9-240))
-----------------------------YKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT-
General information:
TITO was launched using:
RESULT:
Template:
2V4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205111 for 1934 contacts (-106.1/contact) +
2D Compatibility (PS) -25510 + (NN) -12816 + (LL) 1012
1D Compatibility (HY) -22000 + (ID) 5250
Total energy: -269675.0 ( -139.44 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2V4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V4Y-query.scw
PDB file :
Tito_Scwrl_2V4Y.pdb
: