Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLDPLRQ-SLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEAL---DEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
4YQK Chain:A ((9-231))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEID----EEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG--------------DGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPEL----
General information:
TITO was launched using:
RESULT:
Template:
4YQK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130398 for 1464 contacts (-89.1/contact) +
2D Compatibility (PS) -22441 + (NN) -8700 + (LL) 352
1D Compatibility (HY) -20400 + (ID) 4450
Total energy: -186037.0 ( -127.07 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_4YQK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YQK-query.scw
PDB file :
Tito_Scwrl_4YQK.pdb
: