Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQEMTEQWLEGCAVQRIMFRDGLVLNF-DDYNELVISVPLQLTLPAIETSPAEVVAI--DPNDPADHERPLFDFAGATC--TAFVWYDTGDLHLEFSDGHQIDVHPDDRVTAWELYGKYHGYAACLAPGKLRVVRHDVADANGDQ
1JDC Chain:? ((358-418))
---------------------RADSAISFHSGYSGLVATVS--------GSQQTLVVALNSDLGNPGQVASGSFSEAVNASNGQVRVWRS---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14220 for 327 contacts (-43.5/contact) +
2D Compatibility (PS) -6464 + (NN) -4397 + (LL) 6100
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -21331.0 ( -65.23 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1JDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDC-query.scw
PDB file :
Tito_Scwrl_1JDC.pdb
: