Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSPPRFLNSPLSDFFIKWMSRINTWMYRRNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
3R5Y Chain:D ((25-146))
----------------------------YEASDG-AEAGEFDGRPLVILTTVGRKTGALRKTPVMRVEHDGRYAVVASQGGAPTHPAWYFNLVADPRAQLRDKDAVLSVVARELAGPERAEWWERAVRAYPTYQEYQDNTRRLIPVLLLEP
General information:
TITO was launched using:
RESULT:
Template:
3R5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62295 for 888 contacts (-70.2/contact) +
2D Compatibility (PS) -13666 + (NN) -7326 + (LL) 1668
1D Compatibility (HY) -7200 + (ID) 2750
Total energy: -91569.0 ( -103.12 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3R5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5Y-query.scw
PDB file :
Tito_Scwrl_3R5Y.pdb
: