Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNWADVQSRYAAATSQTKGLIFG
1GN6 Chain:B ((2-199))
-AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQTNFPLAIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNWADVQSRYAAATS--------
General information:
TITO was launched using:
RESULT:
Template:
1GN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78387 for 1481 contacts (-52.9/contact) +
2D Compatibility (PS) -21253 + (NN) -10422 + (LL) 612
1D Compatibility (HY) -26000 + (ID) 9850
Total energy: -145300.0 ( -98.11 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_1GN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GN6-query.scw
PDB file :
Tito_Scwrl_1GN6.pdb
: