Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFAQNLLRLRQQNALTQRQMAERLGITVSQLRHFETKGGHPSLVVLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP
3U3W Chain:A ((4-67))
EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV
General information:
TITO was launched using:
RESULT:
Template:
3U3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43088 for 438 contacts (-98.4/contact) +
2D Compatibility (PS) -6585 + (NN) -1245 + (LL) -172
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -56640.0 ( -129.32 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3U3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U3W-query.scw
PDB file :
Tito_Scwrl_3U3W.pdb
: