Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAGLLLSLAWADYRGEARLSLCAIFALAAVITPLLVLFGLKYGLVSTLTERLERAPSVREIIPVGGARYRAEDIAALAARADVAFAVPRTRQIAATADLSGGGETALSVEMIPSAAGDPLLAGLPQPDRPTRVVLSHGAAEKLGAQPGERIVARIGRRMDGQAQSQRLELEVLAVLPQERFARDALFAPLALLEAAEDYRDGRAVAA---------YGWPGKAGETPRARIYPGFRLYARDLDAVEGLRRHFVASGVEVATQAEAIAQVRSLSRNLGLVFWIVA-------ALAIGGAFAAIAASSLAAVERKRRALAVLRLLGFPTA----ALVGFV---MLLALFS----AVFGLFLAGLLYAATAGALNHLFDNQSGEFVCRLLPSHYLTALLATLLCSVLAAASGGWRAARIEAAEGLRDV |
| 5CMN Chain:E ((3-260)) | -------------------------------------------------------------------------------LCPGLLKGVYQSEHLFESDHQSG------AWCKDPLQASDKIYYMPWTPYRTDTLTEYSSKDDFIAGRPTTTYK--LPHRVDGTG---------FVVYDGALFFNKERTRNIVKFDLRTRIKSGEAIIANANYHDTSPYRWGGKS-----------------DIDLAVDENGLWVIYATEQNNGKIVISQLNPYTLRIEGTWDTAYDKRSASNAFMICGILYVVKSNKIDYIYNTDQSKDSLVDVPFPNSYQYIAAVDYNPRDNLLYVWNNYHVVKYSLDF------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5CMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126377 for 1736 contacts (-72.8/contact) +
2D Compatibility (PS) -22987 + (NN) 3358 + (LL) 15056
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -140450.0 ( -80.90 by residue)
QMean score : 0.050
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