Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEIHLPGATTALPARLDGVVIGVLLDVPDA-AAPVVAYPGCPS----EHGLAAATTT--QLSRADIGAQVALMFVAGDPRQPLLIGRIQRLPQEALAQLDGERLEFSAEREIVLRCGKASITLTRAGKVIIRGAYLSSRSTGVNRIKGGSVQIN
2VB2 Chain:X ((13-76))
----------------PQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VB2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39736 for 307 contacts (-129.4/contact) +
2D Compatibility (PS) -6268 + (NN) -3085 + (LL) 6012
1D Compatibility (HY) -800 + (ID) 500
Total energy: -44377.0 ( -144.55 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_2VB2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VB2-query.scw
PDB file :
Tito_Scwrl_2VB2.pdb
: