Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKVVLASQLPNKRNASLAPGLKQR-HVTMLSIAGVIGAGLFVGSGHAIAAAGPAALLAYLIAGTLVVLVMRMLGEMAVASPDTGSFSTYADRSIGRWAGFTIGWLYWWFWVLVIPLEAIA-AAAILNAWFPAIDTWIFALAVTFLLTVTNLFSVARYGEFEFWFALLKVIAIIAFIVLGAVAIVGGLPERE-VSGLSSLMASHGGFVPNGYGAVLGALLTTMFSFMG-TEIVTIAAAESKDPAKQITRATNSVIWRIGLFYLVSIFIVISIVPWNDPLLIQVGSYQRALELLDIPHAKLIVDLVVLVAVASCLNSAIYTSSRMVFSLAKRGDAPSVLKLTNTAHVPRPAVLASTAVGFLTTIVNYFAPEKVFTFLLAS-SGAVALLVYLVIAVAQLRMRKQLQASGQPIEFRMWLYPWL-TWAVILFIVAALSIMLIMPEHRHEVFATALLT------IFTVCLGLLNARRKPRLGEDYAGKTARV |
| 4PE6 Chain:A ((18-339)) | KPFIALSNGFIGN-------GWRQTMIAKFEEAAKQAQADGLIGKYKVVNAPGNNS----------ATEQVAQIKSLLLQKPD---------------------------ALLINPASPTALQPVIQQACDAGVKVVVFDSAIDAPCAYILQNSFVDWATYAAKPVLESIGGKGNVIVVRGV--VGSQPEAEMYETTKKILAEYPQ-------------VKTVATVTGMCD-----GATAQKAVLGVLPSVSTV-----------------------------------------------------DAVIGC------------------GDGYGVAQAFATAGKPIPAVTFETN----GRALSYWKDNKIDNGSVAVMSDPAQSVAALWAALDLLEGRD---------------LPKQMTFPIVL-----------IEEKDRDTWASVLKPDEYAAWPWTRELFRQQVEAIKTGGEPVQPPIPST |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PE6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202807 for 2612 contacts (-77.6/contact) +
2D Compatibility (PS) -30978 + (NN) -891 + (LL) 15304
1D Compatibility (HY) 16800 + (ID) 1000
Total energy: -203572.0 ( -77.94 by residue)
QMean score : 0.122
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