Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRPDSDAAPYEPVLEQTAQAWLVRLRGTPDAATRRAFEDWLAQRPAHAEAYARAEALWRLTEIPASRLAIEEADALEAYLRPRRASRNPRRWAYPLASVACLLAMLWLGGWWQPGDWLQDWRADYVAAPGQVAEWKLADGSYLSLDAGSAVRVRIDGGQRRVEL-LRGAAALRVKRDALPFVVEAGEGRARVLGTEFEVRRGAGATRVT---VLQGRVAVSAGTGAGAAEEVLGAGQQVGFADGKLGRPVAIDAAAALAWRQGWLSFYRRPLAEVLDELARYYPGRILLLDDALGRQPVSGSFRSDDPEAALKSLQAVLGYRQQILFGRLVVIR- |
1NPP Chain:A ((5-248)) | ------------QVQELEKKWYALQVEPGKENEAKENLLKVLELEGL--------KDLVDEVIVPAEEKVVIRA-------------QGKEKYRLSLKGNA---------------------------------------RDISVLGKKGVTTFRIENGEVKVVESVEGDTCVNAPPISKP--------GQKITCKEN----KTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPV-MVGGKPVPLKEEEVQNILNQIKRGVKPSKVE-------FEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NPP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48898 for 1663 contacts (-29.4/contact) +
2D Compatibility (PS) -25284 + (NN) -10175 + (LL) 7048
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -84359.0 ( -50.73 by residue)
QMean score : 0.250
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