Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKINKSRLALAITAGTLGALAQQAVAAGFIEDSKASLTLRNFYINTDNRNGTASPSKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGV--RLDGGGRAGKSGLDRQPGTVFPLESNGEPVHDFASLG-LTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIKTA-RGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSGLPAAGSSNNQRDQDENRLIVSYTLPLL |
| 3SZV Chain:A ((12-401)) | ------------------------YFQGLEDLVEDSHASLELRNFYFNRDFR---------DEWAQGFLLRLESGFSEG--TVGFGVDAIGLLGFKLDS-------------------------QDDYAKLGLT-AKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRI------GGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLG-RSLKSDLRFARASEDGGF----------------------RELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAG--SD---PYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNF--------ANDLDENRLILSYSLALW |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SZV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6898 for 2787 contacts (-2.5/contact) +
2D Compatibility (PS) -37295 + (NN) -7759 + (LL) 988
1D Compatibility (HY) -31600 + (ID) 7600
Total energy: -90164.0 ( -32.35 by residue)
QMean score : 0.256
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