Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATKASFNWEDPLLLDQQLTEEERMVRDSAQQFAQDKLAPRVLEAFRHEQTDPKIFREMGETGLLGATIPEAYGGSGLNYVCYGLIAREVERVDSGYRSMMSVQSSLVMVPIHEFGNEATRQKYLPKLASGEYIGCFGLTEPNHGSDPGSMVTRAKKVDGGYRLSGSKMWITNSPIADVFVVWAKD--DEGQIRGFVLEKGWEGLSAPAIHGKVGLRASITGEIVMDNVFVPEENAFPEVRGLRGPFTCLNSARYGISWGALGAAEFCWHTARQYVLDRQQFGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGIARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAFF |
4W9U Chain:B ((4-395)) | ---RAAFAWEDPFLLEEQLTEDERMIRDSAKAFASDVLLPRVEK---EETTDPELFHLMGQAGLLGVTLPEDYGAANASYVAYGLVAREVERIDSGYRSMMSVQSSLVMYPIYAYGSDEQRKKYLPGLVSGELIGCFGLTEP----DPAGMKTRAEKIDGGYRLSGSKMWISNSPIADVFVVWAKSAAHDNAIRGFILEKGMKGLSAPKIGG---LRASITGEIVMDGVEVSEDAILPNVSGLKGPFGCLNRARYGISWGVLGAAEDCWFRARQYGLDRKQFNKPLAGTQLYQKKLADMQTEIALGIQASLRVGRLFDEGKMAPEMISIVKRNNCGKALDIARQARDMHG------EYHVMRHAQNLETVNTYEGTHDVHALILGRAQTGIQAFF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4W9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182545 for 3246 contacts (-56.2/contact) +
2D Compatibility (PS) -39907 + (NN) -14148 + (LL) 304
1D Compatibility (HY) -40400 + (ID) 13300
Total energy: -289996.0 ( -89.34 by residue)
QMean score : 0.497
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