Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MNFQIVINNIQHIGYAELDVDLNASG-IICIVGKNGVGKTTLIKAILNLKSADTFSRTASPGIFKANSSMRCTYGENSYEFSFDSDINDLNSRSPIPEELKSVIDVELPMPFGQRFNNYQNIMSADMDIRTALILGEYEVPVELISFLSDIYKTNKFNGLVEVSAKGGSYYCIPLDDDRYVREDHLSSGEFFLISLYRKIKGRSKFIVIDEIDISLDAAAQAHLIGWLRRFCTTEQVKVVFTTHSLALMRTLKD-----------------GELFYMEESEGKVSVIPSSYNYIKSVLFGFKGWDRYILTEDAMLKSLLEYVLANYCSGLFFSYQIIHVGGGSNVVDLMRQNSTEGFFSTPENVISVLDGDQAEYRYARRPNVYCIPFLSVEKAIFAEYKAGRFLPELAPDPRFDTPKNFCSAIGRDRHATEADIIKYLCDSYPTEVRRFAQTLSDFLS |
| 2PJZ Chain:A ((1-261)) | MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLLP--------YSGNIFING-----------------------------------MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR----------------RKLYK--LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE----GILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMDKKVSIVKGDLGMKFGALGSLNRIYGII----------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PJZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -135673 for 1800 contacts (-75.4/contact) +
2D Compatibility (PS) -25160 + (NN) -6251 + (LL) 10632
1D Compatibility (HY) -10400 + (ID) 2250
Total energy: -169102.0 ( -93.95 by residue)
QMean score : 0.348
|
|
|