Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDL-NIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
2SSP Chain:E ((7-220))
------------SWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL--
General information:
TITO was launched using:
RESULT:
Template:
2SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94155 for 1774 contacts (-53.1/contact) +
2D Compatibility (PS) -22912 + (NN) -14378 + (LL) 720
1D Compatibility (HY) -20800 + (ID) 5750
Total energy: -157275.0 ( -88.66 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_2SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SSP-query.scw
PDB file :
Tito_Scwrl_2SSP.pdb
: