Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIA-PQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKAT-G-DVRAVADGSQIDWQAT-GNLVVPVVAYVD-D-KPVFRAEITMYVSQA
2H4U Chain:A ((19-139))
-----------------------RNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTE-RGAPGVSVDMNITYMSPAKLGEDIVITAHVL----KQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG--
General information:
TITO was launched using:
RESULT:
Template:
2H4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62770 for 822 contacts (-76.4/contact) +
2D Compatibility (PS) -12348 + (NN) -4442 + (LL) 2788
1D Compatibility (HY) 1600 + (ID) 950
Total energy: -76122.0 ( -92.61 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_2H4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4U-query.scw
PDB file :
Tito_Scwrl_2H4U.pdb
: