Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLHIDSSILGDASASRQLSAELVQAWRQNEDGLDVTYRDLAADAVAHFSALTLAAGSTP-AELRDAALKHEVAVGEEVLEEFLAADVVVIGAPMYNFTISSQLKAWIDRIAVAGKTFRYTENG---PVGLAGDKKVVIVSTAGGVHAGQPTGAAH---EGYLRTVLGFFGITDIEVVRAEGLAYGEEPRTQAIAAARRQIAGQFAAA
2V9C Chain:B ((6-189))
-RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFV---QYRPL-LRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGDEAEQRLLALARSA------------
General information:
TITO was launched using:
RESULT:
Template:
2V9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87912 for 1297 contacts (-67.8/contact) +
2D Compatibility (PS) -18821 + (NN) -9563 + (LL) 816
1D Compatibility (HY) -14800 + (ID) 2850
Total energy: -133130.0 ( -102.64 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2V9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V9C-query.scw
PDB file :
Tito_Scwrl_2V9C.pdb
: