Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFG---EVDAALAQVRAR-GVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARTAE-GVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
3VDQ Chain:C ((2-260))
--LKGKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFGVKAYYLNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFPVDKWNAIIALNLSAVFHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGKGITCNAICPGWVRTPLVEKQIEAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGAAVFLSSAAADQMTGTTLSLDGGWTAR
General information:
TITO was launched using:
RESULT:
Template:
3VDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158859 for 2184 contacts (-72.7/contact) +
2D Compatibility (PS) -27307 + (NN) -8474 + (LL) 260
1D Compatibility (HY) -22400 + (ID) 7700
Total energy: -224480.0 ( -102.78 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3VDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDQ-query.scw
PDB file :
Tito_Scwrl_3VDQ.pdb
: